| Boeger, H., Bushnell, D.A., avis, R., Griesenbeck, J., Lorch, Y., Strattan, J.S., Westover, K.D., and Kornberg, R.D. (2005) Structural basis of eukaryotic gene transcriptions. FEBS Letters 579:899-903. |
| Takagi, Y., Masuda, C.A., Chang, W-H, Komori, H., Wang, D., Hunter, T., Joazeiro, C.A.P., and Kornberg, R.D. (2005) Ubiquitin ligase activity of TFIIH and the transcriptional response to DNA damage. Molecular Cell 18:237-243. |
| Ackerson, C.J., Jadzinsky, P.D., and Kornberg, R.D. (2005) Thiolate ligands for synthesis of water soluble gold clusters. J. Amer. Chem. Soc., in press. |
| Lorch, Y., Davis, B., and Kornberg, R.D. (2005) Chromatin remodeling by DNA bending, not twisting. Proc. Natll. Acad. Sci. USA 102:1329-1332. |
| Batada, N., Westover, K.A., Bushnell, D.A., Levitt, M., and Kornberg, R.D. (2004) Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center. Proc. Natl. Acad. Sci. USA 101:17361-17364. |
| Bourbon, H.M. et al. (2004) A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II. Molecular Cell 14:553-7. |
| Westover, K.D., Bushnell, D.A., and Kornberg, R.D. (2004) Structural basis of transcription: Nucleotide selection by rotation in the RNA polymerase II active center. Cell 119:481-9. |
| Boeger, H., Griesenbeck, J., Strattan, J.S., and Kornberg, R.D. (2004) Removal of promoter nucleosomes by disassembly rather than sliding in vivo. Molecular Cell 14:667-673. |
| Westover, K.D., Bushnell, D.A., and Kornberg, R.D. (2004) Structural basis of transcription: separation of RNA and DNA by RNA polymerase II. Science 303:1014-1016. |
| Bushnell, D.A., Westover, K.D., Davis, R., and Kornberg, R.D. (2004) Structural basis of transcription: an RNA polymerase II - TFIIB cocrystal at 4.5 Å. Science 303:983-988. |
| Griesenbeck, J., Boeger, H., Strattan, J.S., and Kornberg. R.D. (2003) Purification of defined chromosomal domains. Methods in Enzymology 375:170-178. |
| Lorch, Y. and Kornberg, R.D. (2003) Isolation and assay of the RSC chromatin-remodeling complex from Saccharomyces cerevisiae. Methods in Enzymology 377:316-322. |
| Kuras, L., Borggrefe, T., and Kornberg, R.D. (2003) Association of the Mediator complex with enhancers of active genes. Proc. Natl. Acad. Sci. USA 100:13887-13891. |
| Takagi, Y., Komori, H., Chang, W.-H., Hudmon, A., Erdjument-Bromage, H., Tempst, P., and Kornberg, R.D. (2003) Revised subunit structure of yeast TFIIH and reconciliation with human TFIIH. J. Biol. Chem. 278:43897-43900. |
| Griesenbeck, J., Boeger, H., Strattan, J.S., and Kornberg, R.D. (2003) Affinity purification of specific chromatin segments from chromosomal loci in yeast. Mol. Cell. Biol. 23:9275-9282. |
| Chung, W.-H., Craighead, J.L., Chang, W.-H., Ezeokonkwo, E., Baraket-Samish, A., Kornberg, R.D., and Asturias, F.J. (2003) RNA polymerase II/TFIIF structure and conserved organization of the initiation complex. Molecular Cell 12:1003-1013. |
| Bushnell, D.A. and Kornberg, R.D. (2003) Complete, 12-subunit RNA polymerase II at 4.1 Å resolution: Implications for the initiation of transcription. Proc. Natl. Acad. Sci. USA 100:6969-6973. |
| Boeger, H., Griesenbeck, J., and Kornberg, R.D. (2003) Complete unfolding of nucleosomes on a transcriptionally active promoter. Molecular Cell 11:1587-1598. |
| Asturias, F.J., Chung, W.-C., Kornberg, R.D., and Lorch, Y. (2002) Structural analysis of the RSC chromatin-remodeling complex. Proc. Natl. Acad. Sci. USA 99:13477-13480. |
| Borggrefe, T., Davis, R., Erdjument-Bromage, H., Tempst, P., and Kornberg, R.D. (2002) A complex of the Srb8, -9, -10, and -11 transcriptional regulatory proteins from yeast. J. Biol. Chem. 277:44202-44207. |
| Davis, J.A., Takagi, Y. Kornberg, R.D., and Asturias, F.J. (2002) Structure of the yeast RNA polymerase II holoenzyme: conformation and polymerase interaction. Molecular Cell 10:409-415. |
| Kornberg, R.D. and Lorch Y. (2002) Chromatin structure and transcription: Where do we go from here? Current Opinion in Genetics & Development 12:249-251. |
| Bushnell, D.A., Cramer, P., and Kornberg, R.D. (2002) Structural basis of transcription: ??Amanitin-RNA polymerase II cocrystal at 2.8 Å resolution. Proc. Natl. Acad. Sci. USA 99:1218-1222. |
| Nagy, P.L., Griesenbeck, J., Kornberg, R.D., and Cleary, M.L. (2002) A truthorax group complex purified from Saccharomyces cerevisiae is required for methylation of histone H3. Proc. Natl. Acad. Sci. USA 99:90-94. |
| Borggrefe, T., Davis, R., Bareket-Samish, A., and Kornberg, R.D. (2001) Quantitation of the RNA polymerase II transcription machinery in yeast. J. Biol. Chem. 276: 47150-47153. |
| Kornberg, R.D. (2001) The eukaryotic gene transcription machinery. Biol. Chem. 382:1109-1107. |
| Li, Y., Takagi, Y., Jiang, Y., Tokunaga, Erdjument-Bromage, H., Tempst, P., and Kornberg, R.D. (2001) A multiprotein complex that interacts with RNA polymerase II elongator. J. Biol. Chem. 276:29628-29631. |
| Gnatt, A.L., Cramer, P., Fu, J., Bushnell. D.A., and Kornberg, R.D. (2001) Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 Å resolution. Science 292:1876-1882. |
| Cramer, P., Bushnell, D.A., and Kornberg, R.D. (2001) Structural basis of transcription: RNA polymerase II at 2.8 Ångstrom resolution. Science 292:1863-1876. |
| Lorch, Y., Zhang, M., and Kornberg, R.D. (2001) RSC unravels the nucleosome. Molecular Cell 7:89-95. |
| Bushnell, D.A., Cramer, P., and Kornberg, R.D. (2001) Selenomethionine incorporation in Saccharomyces cerevisiae RNA polymerase II. Structure 9:R11-R14. |
| Dotson, M.R., Yuan, C.X., Roeder, R.G., Myers, L.C., Gustafsson, C.M., Jiang, Y.W., Yang, L., Kornberg, R.D. and Asturias, F.J. (2000) Structural organization of yeast and mammalian mediator complexes. Proc. Natl. Acad. Sci. USA 97:14307-14310. |
| Chang, W.-H. and Kornberg R.D. (2000) Electron crystal structure of the transcription factor and DNA repair complex, core TFIIH. Cell 102:609-613. |
| Lorch, Y., Beve, J., Gustafsson, C.M., Myers, L.C., and Kornberg, R.D. (2000) Mediator-nucleosome interaction. Molecular Cell 6:197-201. |
| Myers, L.C. and Kornberg, R.D. (2000) Mediator of transcriptional regulation. Ann. Rev. Biochem. 69:729-749. |
| Jensen, G.J. and Kornberg, R.D. (2000) Defocus-gradient corrected back-projection. Ultramicroscopy 84:57-64. |
| Cramer, P., Bushnell, D.A., Fu, J., Gnatt, A.L., Maier-Davis, B., Thompson, N.E., Burgess, R.R., Edwards, A.M., David, P.R., and Kornberg, R.D. (2000) Architecture of RNA polymerase II and implications for the transcription mechanism. Science 288:640-649. |
| Feaver, W.J., Huang, W., Gileadi, O., Myers, L., Gustafsson, C.M., Kornberg, R.D., and Friedberg, E.C. (2000) Subunit interactions in yeast transcription/repair factor TFIIH. J. Biol. Chem. 275:5941-5946. |
| Kornberg, R.D. (1999) Eukaryotic transcriptional control. TIBS 24:M46-M49 (Millennium Issue). |
| Cairns, B.R., Schlichter, A., Erdjument-Bromage, H., Tempst, P., Kornberg, R.D., and Winston, F. (1999) Two functionally distinct forms of the RSC nucleosome-remodeling complex, containing essential AT hook, BAH, and bromodomains. Molecular Cell 4:715-723. |
| Fu, J., Gnatt, A.L., Bushnell, D.A., David, P.R., Jensen, G.J., and Kornberg, R.D. (1999) Yeast RNA polymerase II at 5 Å resolution. Cell 98:799-810. |
| Poglitsch, C.L., Meredith, G., Gnatt, A., Jensen, G.J., Chang, W-H., Fu, J, and Kornberg, R.D. (1999) Electron crystal structure of an RNA polymerase II transcription elongation complex. Cell 98:791-798. |
| Kornberg, R.D. and Lorch Y. (1999) Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell: 98:285-294. |
| Kornberg, R.D. and Lorch, Y. (1999) Chromatin-modifying and -remodeling complexes. Current Opinion in Genetics & Development 9:148-151. |
| Asturias, F.J. and Kornberg, R.D. (1999) Protein crystallization on lipid layers and structure determination of the RNA polymerase II transcription initiation complex. J. Biol. Chem. 274:6813-6816. |
| Leuther, K.K., Hammarsten, O., Kornberg, R.D., and Chu, G. (1999) Structure of DNA-dependent protein kinase: Implications for its activation by DNA. EMBO J. 18:1114-1123. |
| Asturias, F.J., Jiang, Y.W., Myers, L.C., Gustafsson, C.M., and Kornberg, R.D. (1999). Conserved structures of Mediator and RNA Polymerase II holoenzyme. Science 283:985-987. |
| Lorch, Y., Zhang, M., and Kornberg, R.D. (1999) Histone octamer transfer by a chromatin-remodeling complex. Cell 96:389-392. |
| Myers, L.C., Gustafsson, C.M., Hayashibara, K.C., Brown, P.O., and Kornberg, R.D. (1999) Mediator protein mutations that selectively abolish activated transcription. Proc. Natl. Acad. Sci. USA 96:67-72. |
| Kornberg, R.D. (1998) Mechanism and regulation of yeast RNA polymerase II transcription. Cold Spring Harbor Symposium on Quantitative Biology, Volume LXIII, Cold Spring Harbor Laboratory Press, pp. 229-232. |
| Cairns, B.R., Erdjument-Bromage, H., Tempst, P, Winston, F., and Kornberg, R.D. (1998) Two actin-related proteins are shared functional components of the chromatin remodeling complexes RSC and SWI/SNF. Molecular Cell 2:639-651. |
| Gustafsson, C.M., Myers, L.C., Beve, J., Spahr, H., Lui, M., Erdjument-Bromage, H., Tempst, P., and Kornberg, R.D. (1998) Identification of new mediator subunits in the RNA polymerase II holoenzyme from Saccharomyces cerevisiae. J. Biol. Chem. 273:30851-30854. |
| Lorch, Y., Cairns, B.R., Zhang, M., and Kornberg, R.D. (1998) Activated RSC-nucleosome complex and persistently altered form of the nucleosome. Cell 94:29-34. |
| Jensen, G.J., and Kornberg, R.D. (1998) Single particle selection and alignment with heavy atom cluster-antibody conjugates. Proc. Natl. Acad. Sci. USA 95:9262-9267. |
| Jiang, Y.W., Veschambre, P., Erdjument-Bromage, H., Tempst, P., Conaway, J.W., Conaway, R.C., and Kornberg, R.D. (1998) Mammalian mediator of transcriptional regulation and its possible role as an end-point of signal transduction pathways. Proc. Natl. Acad. Sci. USA 95:8538-8543. |
| Jensen, G.J., Meredith, G., Bushnell, D.A., and Kornberg, R.D. (1998) Structure of wild type RNA polymerase II. EMBO J. 17:2353-2358. |
| Fu, J., Gerstein, M., David, P., Gnatt, A.L., Bushnell, D.A., Edwards, A.M., and Kornberg, R.D. (1998) Repeated tertiary fold of RNA polymerase II and implications for DNA binding. J. Mol. Biol. 280:317-322. |
| Asturias, F.J., Chang, W., Li, Y., and Kornberg, R.D. (1998) Electron crystallography of yeast RNA polymerase II preserved in vitreous ice. Ultramicroscopy 70:133-144. |
| Myers, L.C., Gustafsson, C.M., Lui, M., Erdjument-Bromage, H., Tempst, P., and Kornberg, R.D. (1998) The Med proteins of yeast and their function through the RNA polymerase II carboxy-terminal domain. Genes & Development 12:45-54. |
| Edwards, A.M., Darst, S.A., Hemming, S.A., Asturias, F.J., David, P.R., and Kornberg, R.D. (1997) Two-dimensional protein crystals in aid of three-dimensional protein crystal growth. Methods in Enzymology 276:166-171. |
| Gnatt, A., Fu, J., and Kornberg, R.D. (1997) Formation and crystallization of yeast RNA polymerase II elongation complexes. J. Biol. Chem. 272:30799-30805. |
| Asturias, F.J., Meredith, G.D., Poglitsch, C.L., and Kornberg, R.D. (1997) Two conformations of RNA polymerase II revealed by electron crystallography. J. Mol. Biol. 272:536-540. |
| Feaver, W.J., Henry, N.L., Wang, Z., Wu, X., Svejstrup, J.Q., Bushnell, D.A., Friedberg, E., and Kornberg R.D. (1997) Genes for Tfb2, Tfb3, and Tfb4 subunits of yeast transcription/repair factor IIH: Homology to human cyclin-dependent kinase activating kinase and IIH subunits. J. Biol. Chem. 272:19319-19327. |
| Myers, L., Leuther, K., Bushnell, D.A., Gustafsson, C., and Kornberg R.D. (1997) Yeast RNA polymerase II transcription reconstituted with purified proteins. METHODS: A Companion to Methods in Enzymology 12:212-216. |
| Svejstrup, J.Q., Li, Y., Fellows, J., Gnatt, A., Bjorklund S., and Kornberg, R.D. (1997) Evidence for a mediator cycle at the initiation of transcription. Proc. Natl. Acad. Sci. USA 94:6075-6078. |
| Cao, Y., Cairns, B.R., Kornberg, R.D., and Laurent, B.C. (1997) Sfh1p, a component of a novel chromatin-remodeling complex, is required for cell cycle progression. Mol. Cell. Biol. 17:3323-3334. |
| Wang, Z., Wei, S., Reed, S.H., Wu, X, Svejstrup, J.Q., Feaver, W.J., Kornberg, R.D., and Friedberg, E.C. (1997) The RAD7, RAD16 and RAD23 genes of Saccharomyces cerevisiae: Requirement for transcription-independent nucleotide excision repair in vitro and interactions between the gene products. Mol. Cell. Biol. 17:635-643. |
| Gustafsson, C.M., Myers, L.C., Li, Y., Redd, M.J., Erdjument-Bromage, H., Tempst, P., and Kornberg, R.D. (1997) Identification of Rox3 as a component of mediator and RNA polymerase II holoenzyme. J. Biol. Chem. 272:48-50. |
| Cairns, B.R., Lorch, Y., Li, Y., Zhang, M., Lacomis, L., Erdjument-Bromage, H., Tempst, P., Laurent, B., Kornberg, R.D. (1996) RSC, an essential, abundant chromatin-remodeling complex. Cell 87:1249-1260. |
| Kornberg, R.D. (1996) RNA polymerase II transcription control. TIBS 21:325-326. |
| Sakurai, H., Kim, Y.-J., Ohishi, T., Kornberg, R.D., and Fukasawa, T. (1996) The yeast GAL11 protein binds to the transcription factor IIE through GAL11 regions essential for its in vivo function. Proc. Natl. Acad. Sci. USA 93:9488-9492. |
| Cairns, B.R., Levinson, R.S., Yamamoto, K.R., and Kornberg, R.D. (1996) Essential role of Swp73p in function of the yeast Swi/Snf complex. Genes & Development 10:2131-2144. |
| Henry, N.L., Bushnell, D.A., and Kornberg, R.D. (1996) A yeast transcriptional stimulatory protein similar to human PC4. J. Biol. Chem. 271:21842-21847. |
| Bushnell, D.A., Bamdad, C., and Kornberg, R.D. (1996) A minimal set of RNA polymerase II transcription protein interactions. J. Biol. Chem. 271:20l70-20174. |
| Kornberg, R.D. (1996) The nucleosome. In Principles of Medical Biology 5, Molecular and Cellular Genetics, pages 1-10. E.E. Bittar and N. Bittar, editors, JAI Press Ltd. (London). |
| Cairns, B.R., Henry, N.L., and Kornberg, R.D. (1996) TFG3/TAF30/ANC1, a component of the yeast SWI/.SNF complex that is similar to the leukemogenic proteins ENL and AF-9. Mol. Cell. Biol. 16:3308-3316. |
| Leuther, K.K., Bushnell, D.A., and Kornberg, R.D. (1996) Two-dimensional crystallography of transcription factor IIB- and IIE-RNA polymerase II complexes: Implications for start site selection and initiation complex formation. Cell 85:773-779. |
| Meredith, G.D., Chang, W.-H., Li, Y., Bushnell, D.A., Darst, S.A., and Kornberg, R.D. (1996) The C-terminal domain in the structure of RNA polymerase II. J. Mol. Biol. 258:413-419. |
| Li, Y., Bjorklund, S., Kim, Y.-J., and Kornberg, R.D. (1996) Yeast RNA polymerase II holoenzyme. Methods in Enzymology 273:172-176. |
| Svejstrup, J.Q., Feaver, W.J., and Kornberg, R.D. (1996) Subunits of yeast RNA polymerase II transcription factor TFIIH encoded by the CCL1 gene. J. Biol. Chem. 271:643-645. |
| Sugimoto, K., Matsumoto, K., Kornberg, R.D., Reed, S.I., and Wittenberg, C. (1995) Dosage suppressors of a dominant G1 cyclin mutant, CLN3-2: Identification of a yeast gene encoding a putative RNA/ssDNA binding protein. Mol. Gen. Genet. 248:712-718. |
| Li, Y., Bjorklund, S., Jiang, Y.W., Kim, Y.-J., Lane, W.S., Stillman, D.J., and Kornberg, R.D. (1995) Yeast global transcriptional regulators Sin4 and Rgr1 are components of mediator complex/RNA polymerase II holoenzyme. Proc. Natl. Acad. Sci. USA 92:10864-10868. |
| Poon, D., Bai, Y., Campbell, A.M., Bjorkland, S., Kim. Y.-J., Zhou, S., Kornberg, R.D., and Weil, P.A. (1995) Identification and characterization of a TFIID-like multiprotein complex from Sacchararomyces cerevisiae. Proc. Natl. Acad. Sci. USA 92:8224-8228. |
| Kornberg, R.D., and Lorch, Y. (1995) Interplay between chromatin structure and transcription. Current Opinion in Cell Biology 7:371-375. |
| Wang, Z., Buratowski, S., Svejstrup, J.Q., Feaver, W.J., Wu, X., Kornberg, R., Donahue, T.F., and Friedberg, E.C. (1995) Yeast TB1 and SSL1 genes, which encode subunits of transcription factor IIH (TFIIH), are required for nucleotide excision repair and RNA polymerase II transcription. Mol Cell. Biol. 15:2288-2293. |
| Asturias, F.J., and Kornberg, R.D. (1995) A novel method for transfer of two-dimensional crystals from the air/water interface to specimen grids. J. Structural Biology 114:60-66. |
| Hemming, S.A., Bochkarev, A., Darst, S.A., Kornberg, R.D., Ala, P., Yang, D.S.C., and Edwards, A.M. (1995) The mechanism of protein crystal growth from lipid layers. J. Mol. Biol. 246:308-316. |
| Friedberg, E.C., Bardwell, A.J., Bardwell, L., Feaver, W.J., Kornberg, R.D., Svejstrup, J.Q., Tomkinson, A.E., and Wang, Z. (1995) Nucleotide excision repair in the yeast Saccharomyces cerevisiae:: Its relationship to specialized mitotic recombination and RNA polymerase II basal transcription. Phil. Trans. Royal Soc. London B 347:63-68. |
| Svejstrup, J.Q., Wang, Z., Feaver, W.J., Wu, X., Bushnell, D.A., Donahue, T.F., Friedberg, E.C., and Kornberg, R.D. (1995) Different forms of TFIIH for transcription and DNA repair: Holo-TFIIH and a nucleotide excision repairosome. Cell 80:21-28. |
| Feaver, W.J., Svejstrup, J.Q., Henry, N.L., and Kornberg, R.D. (1994) Relationship of CDK-activating kinase and RNA polymerase II CTD kinase TFIIH/TFIIK. Cell 79:1103-1109. |
| Svejstrup, J.Q., Feaver, W.J., LaPointe, J., and Kornberg, R.D. (1994) RNA polymerase transcription factor IIH holoenzyme from yeast. J. Biol. Chem. 269:28044-28048. |
| Lorch, Y., and Kornberg, R.D. (1994) Isolation of the yeast histone octamer. Proc. Natl. Acad. Sci. USA 91:11032-11034. |
| Feaver, W.J., Henry, N.L., Bushnell, D.A., Sayre, M.H., Brickner, J.H., Gileadi, O., and Kornberg, R.D. (1994) Yeast TFIIE: Cloning, expression and homology to vertebrate proteins. J. Biol. Chem. 269:27549-27553. |
| Henry, N.L., Campbell, A.M., Feaver, W.J., Poon, D., Weil, P.A., and Kornberg, R.D. (1994) TFIIF-TAF-RNA polymerase II connection. Genes and Development 8:2868-2878. |
| Bardwell, A.J., Bardwell L., Iyer, N., Svejstrup, J.Q., Feaver, W.J., Kornberg, R.D., and Friedberg, E.C. (1994) Yeast nucleotide excision repair proteins Rad2 and Rad4 interact with RNA polymerase II basal transcription factor b. Mol. Cell. Biol. 14:3569-3576. |
| Kim, Y.J., Bjorklund, S., Li, Y., Sayre, M.H., and Kornberg, R.D. (1994) A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II. Cell 77:599-608. |
| Kim, T.K., Hashimoto, S., Kelleher III, R.J., Flanagan, P.M., Kornberg, R.D., Horikoshi, M., and Roeder, R.G. (1994) Effects of activation-defective TBP mutations on transcription initiation in yeast. Nature 369:252-255. |
| Bardwell, L., Bardwell, A.J., Feaver, W.J., Svejstrup, J., Kornberg, R.D., and Friedberg, E.C. (1994) Yeast RAD3 protein binds directly to both SSL2 and SSL1 proteins: Implications for the structure and function of transcription/ repair factor b. Proc. Natl. Acad. Sci. USA 91:3926-3930. |
| Edwards, A.M., Darst, S.A., Hemming, S.A., Li, Y., and Kornberg, R.D. (1994) Epitaxial growth of protein crystals on lipid layers. Nature Structural Biology 1:195-197. |
| Li, Y., and Kornberg, R.D. (1994) Interplay of positive and negative effectors in function of the C terminal repeat domain of RNA polymerase II. Proc. Natl. Acad. Sci. USA 91:2362-2366. |
| Wang, Z., Svejstrup, J.Q., Feaver, W.J., Wu, X., Kornberg, R.D., and Friedberg, E.C. (1994) Transcription factor b (TFIIH) is required during nucleotide-excision repair in the yeast. Nature 368:74-76. |
| Cairns, B.R., Kim, Y.J., Sayre, M.H., Laurent, B.C., and Kornberg, R.D. (1994) A multisubunit complex containing the SWI1/ADR6, SWI2/SNF2, SWI3, SNF5, and SNF6 gene products isolated from yeast. Proc. Natl. Acad. Sci. USA 91:1950-1954. |
| Li, Y., Flanagan, P.M., Tschochner, H., and Kornberg, R.D. (1994) RNA polymerase II initiation factor interactions and transcription start site selection. Science 263:805-807. |
| Kornberg, R.D., Bushnell, D., Edwards, A.M., Feaver, W.J., Flanagan, P.M., Gileadi, O., Henry N.L., Kelleher III, R.J., Li, Y., Lorch, Y., Lue, N.F., Sayre, M.H., Svejstrup, J., and Tschochner, H. (1994) Resolution and reconstruction of yeast RNA polymerase II transcription. In Transcription: Mechanisms and Regulation, R.C. Conaway and J.W. Conaway, editors. Raven Press, Ltd. (New York, New York) pp. 19-26. |
| Feaver, W.J., Svejstrup, J.Q., Bardwell, L., Bardwell, A.J., Buratowski, S., Gulyas, K.D., Donahue, T.F., Friedberg, E.C., and Kornberg, R.D. (1993) Dual roles of a multiprotein complex from S. cerevisiae in transcription and DNA repair. Cell 75:1379-1387. |
| Sayre, M.H., and Kornberg, R.D. (1993) Mechanism and regulation of yeast RNA polymerase II transcription. Cellular and Molecular Biology Research 39:349-354. |
| Chasman, D.I., Flaherty, K.M., Sharp, P.A., and Kornberg, R.D. (1993) Crystal structure of yeast TATA-binding protein and model for interaction with DNA. Proc. Natl. Acad. Sci. USA 90:8174-8178. |
| Lue, N.F., and Kornberg, R.D. (1993) A possible role for the yeast TATA-element binding protein in DNA replication. Proc. Natl. Acad. Sci. USA 90:8018-8022. |
| Lorch, Y., and Kornberg, R.D. (1993) Nucleosome positioning. Nucleic Acids and Molecular Biology 7:217-225. |
| Lorch, Y., and Kornberg, R.D. (1993) Near zero linking difference upon TFIID binding to promoter DNA. Mol. Cell. Biol. 13:1872-1875. |
| Ku, A.C., Darst, S.A., Robertson, C.R., Gast, A.P., and Kornberg, R.D. (1993) Molecular analysis of two-dimensional protein crystallization. J. Physical Chemistry 97:3013-3016. |
| Lorch, Y., LaPointe, J.W., and Kornberg, R.D. (1992) Initiation on chromatin templates in a yeast RNA polymerase II transcription system. Genes & Development 6:2282-2287. |
| Tschochner, H., Sayre, M.H., Flanagan, P.M., Feaver, W.J., and Kornberg, R.D. (1992) Yeast RNA polymerase II initiation factor e: Isolation and identification as the functional counterpart of human transcription factor IIB. Proc. Natl. Acad. Sci. USA. 89: 11291-11296. |
| Henry, N.L., Sayre, M.H., and Kornberg, R.D. (1992) Purification and characterization of yeast RNA polymerase II general initiation factor g. J. Biol. Chem. 267:23388-23392. |
| Sayre, M.H., Tschochner, H., and Kornberg, R.D. (1992) Purification and properties of Saccharomyces cerevisiae RNA polymerase II general initiation factor a. J. Biol. Chem. 267:23383-23387. |
| Sayre, M.H., Tschochner, H., and Kornberg, R.D. (1992) Reconstitution of transcription with five purified protein factors and RNA Polymerase II from Saccharomyces cerevisiae. J. Biol. Chem. 267:23376-23382. |
| Ku, A.C., Darst, S.A., Kornberg, R.D., Robertson, C.R., and Gast, A.P. (1992) Dendritic growth of two-dimensional protein crystals. Langmuir 8:2357-2360. |
| Flanagan, P.M., Kelleher III, R.J., Tschochner, H., Sayre, M.H., and Kornberg, R.D. (1992) Simple derivation of TFIID-dependent RNA polymerase II transcription systems from Schizosaccharomyces pombe and other organisms, and factors required for transcriptional activation. Proc. Natl. Acad. Sci. USA 89:7659-7663. |
| Gileadi, O., Feaver, W.J., and Kornberg, R.D. (1992) Cloning of a subunit of yeast RNA polymerase II transcription factor b and CTD kinase. Science 257:1389-1392. |
| Kornberg, R.D., and Lorch, Y. (1992) Chromatin structure and transcription. Annu. Rev. Cell Biol. 8:563-589. |
| Cairns, B.R., Ramer, S.W., and Kornberg, R.D. (1992) Order of action of components in the yeast pheromone response pathway revealed with a dominant allele of the STE11 kinase and the multiple phosphorylation of the STE7 kinase. Genes & Development 6:1305-1318. |
| Kelleher III, R.J., Flanagan, P.M., Chasman, D.I., Ponticelli, A.S., Struhl, K., and Kornberg, R.D. (1992) Yeast and human TFIIDs are interchangeable for the response to acidic transcriptional activators in vitro. Genes & Development 6:296-303. |
| Kornberg, R.D., Chasman, D.I., Darst, S.A., Edwards, A.M., Feaver, W.J., Flanagan, P.M., Gileadi, O., Henry, N.L., Kelleher III, Li, Y., R.J., Lorch, Y., Lue, N.F., Sayre, M.H., and Tschochner, H. (1992) Yeast RNA polymerase II transcription in vitro: General initiation factors; novel mediator of transcriptional activation; three-dimensional structure of RNA polymerase II. In Transcriptional Regulation, pp. 349-362, Cold Spring Harbor Press. |
| Feaver, W.J., Gileadi, O., Li, Y., and Kornberg, R.D. (1991) CTD kinase associated with yeast RNA polymerase II initiation factor b. Cell 67:1223-1330. |
| Kornberg, R.D., and Lorch, Y. (1991) Irresistible force meets immovable object: Transcription and the nucleosome. Cell 67:833-836. |
| Feaver, W.J., Gileadi, O., and Kornberg, R.D. (1991) Purification and characterization of yeast RNA polymerase II transcription factor b. J. Biol. Chem. 266:19000-19005. |
| Darst, S.A., Kubalek, E.W., Edwards, A.M., and Kornberg, R.D. (1991) Two-dimensional and epitaxial crystallization of a mutant form of yeast RNA polymerase II. J. Mol. Biol. 221:347-357. |
| Kornberg, R.D., and Darst, S.A. (1991) Two-dimensional crystals of proteins on lipid layers. Current Opinion in Structural Biology 1:642-646. |
| Darst, S.A., Edwards, A.M., Kubalek, E.W., and Kornberg, R.D. (1991) Three-dimensional structure of yeast RNA polymerase II at 16Å resolution. Cell 66:121-128. |
| Flanagan, P.M., Kelleher III, R.J., Sayre, M.H., Tschochner, H., and Kornberg, R.D. (1991). A mediator for activation of RNA polymerase II transcription in vitro. Nature 350:436-438. |
| Kubalek, E.W., Kornberg, R.D., and Darst, S.A. (1991) Improved transfer of two-dimensional crystals from the air/water interface to specimen support grids for high-resolution analysis by electron microscopy. Ultramicroscopy 35:295-304. |
| Darst, S.A., Ahlers, M., Meller, P.H., Kubalek, E.W., Blankenburg, R., Ribi, H.O., Ringsdorf, H., and Kornberg, R.D. (1991) Two-dimensional crystals of streptavidin on biotinylated lipid layers and their interactions with biotinylated macromolecules. Biophysical J. 59:387-396. |
| Edwards, A.M., Kane, C.M., Young, R.A., and Kornberg, R.D. (1991) Two dissociable subunits of yeast RNA polymerase II stimulate the initiation of transcription at a promoter in vitro. J. Biol. Chem. 266:71-75. |
| Lue, N.F., Flanagan, P.M., Kelleher, III, R.J., Edwards, A.M., and Kornberg, R.D. (1990) RNA polymerase II transcription in vitro. Methods in Enzymology 194:545-550. |
| Schultz, P., Celia, H., Riva, M., Darst, S.A., Colin, P., Kornberg, R.D., Sentenac, A., and Oudet, P. (1990) Structural study of the yeast RNA polymerase A: Electron microscopy of lipid-bound molecules and two-dimensional crystals. J. Mol. Biol. 216:353-362. |
| Lorch, Y., Lue, N.F., and Kornberg, R.D. (1990) Interchangeable RNA polymerase I and II enhancers. Proc. Natl. Acad. Sci. USA 87:8202-8206. |
| Lue, N.F., and Kornberg, R.D. (1990) Accurately initiated, enhancer-dependent transcription by RNA polymerase I in yeast extracts. J. Biol. Chem. 265:18091-18094. |
| Kornberg, R.D., Buchman, A.R., Chasman, D.I., Darst, S.A., Edwards, A., Flanagan, P., Kelleher, R., Lorch, Y., Lue, N.F., and Sugimoto, K. (1990) Gene activation and transcription in a soluble system from yeast. In Developmental Biology, E.H. Davidson, J.V. Ruderman, J.W. Posakony, editors. Wiley-Liss, Inc. (New York, New York), pp. 307-317. |
| Flanagan, P.M., Kelleher, III, R.J., Feaver, W.J., Lue, N.F., LaPointe, J.W., and Kornberg, R.D. (1990) Resolution of factors required for the initiation of transcription by yeast RNA polymerase II. J. Biol. Chem. 265:11105-11107. |
| Kelleher, III, R.J., Flanagan, P.M., and Kornberg, R.D. (1990) A novel mediator between activator proteins and the RNA polymerase II transcription apparatus. Cell 61:1209-1215. |
| Sachs, A.B., and Kornberg, R.D. (1990) Purification and characterization of polyadenylate-binding protein. Methods in Enzymology 181:332-352. |
| Chasman, D.I., and Kornberg, R.D. (1990) GAL4 protein: Purification, association with GAL80 protein, and conserved domain structure. Mol. Cell. Biol. 10:2916-2923. |
| Chasman, D.I., Lue, N.F., Buchman, A.R., LaPointe, J.W., Lorch, Y., and Kornberg, R.D. (1990) A yeast protein that influences the chromatin structure of UASG and functions as a powerful auxiliary gene activator. Genes & Development 4:503-514. |
| Edwards, A.M., Darst, S.A., Feaver, W.J., Thompson, N.E., Burgess, R.R., and Kornberg, R.D. (1990) Purification and lipid layer crystallization of yeast RNA polymerase II. Proc. Natl. Acad. Sci. USA 87:2122-2126. |
| Buchman, A.R., and Kornberg, R.D. (1990) A yeast ARS-binding protein activates transcription synergistically in combination with other weak activating factors. Mol. Cell. Biol. 10:887-897. |
| Kornberg, R.D., Buchman, A.R., Chasman, D.I., Darst, S.A., Edwards, A.M., Feaver, W.J., Flanagan, P.M., Kelleher, R.J., Kubalek, E.W., LaPointe, J.W., Lorch, Y., and Lue, N.F. (1989) Gene activation and transcription with purified factors from yeast. In Gene Regulation and AIDS, T.S. Papas, editor. Gulf Publishing Co. (Houston, Texas), pp. 9-18. |
| Lue, N.F., Flanagan, P., Sugimoto, K., and Kornberg, R.D. (1989) Initiation by yeast RNA polymerase II at the adenoviral major late promoter in vitro. Science 246:661-664. |
| Chasman, D.I., Leatherwood, J., Carey, M., Ptashne, M., and Kornberg, R.D. (1989) Activation of yeast polymerase II transcription by herpesvirus VP16 and GAL4 derivatives in vitro. Mol. Cell. Biol. 9:4746-4749. |
| Darst, S.A., Kubalek, E.W., and Kornberg, R.D. (1989) Three-dimensional structure of Escherichia coli RNA polymerase holoenzyme determined by electron crystallography. Nature 340:730-732. |
| Kornberg, R.D., LaPointe, J.W., and Lorch, Y. (1989) Preparation of nucleosomes and chromatin. Methods in Enzymology 170:3-14. |
| Fedor, M.J., and Kornberg, R.D. (1989) Upstream activation sequence-dependent alterations of chromatin structure and transcription activation of the yeast GAL1-GAL10 genes. Mol. Cell. Biol. 9:1721-1732. |
| Lue, N.F., Buchman, A.R., and Kornberg, R.D. (1989) Activation of yeast RNA polymerase II transcription by a thymidine-rich upstream element in vitro. Proc. Natl. Acad. Sci. USA 86:486-490. |
| Lorch, Y., LaPointe, J.W., and Kornberg, R.D. (1988) On the displacement of histones from DNA by transcription. Cell 55:743-744. |
| Buchman, A.R., Lue, N.F., and Kornberg, R.D. (1988) Connections between transcriptional activators, silencers, and telomeres as revealed by functional analysis of a yeast DNA-binding protein. Mol. Cell. Biol. 8:5086-5099. |
| Fedor, M.J., Lue, N.F., and Kornberg, R.D. (1988) Statistical positioning of nucleosomes by specific protein-binding to an upstream activating sequence in yeast. J. Mol. Biol. 204:109-128. |
| Darst, S.A., Ribi, H.O., Pierce, D.W., and Kornberg, R.D. (1988) Two-dimensional crystals of Escherichia coli RNA polymerase holoenzyme on positively charged lipid layers. J. Mol. Biol. 203:269-273. |
| Lorch, Y., LaPointe, J.W., and Kornberg, R.D. (1988) Nucleosomes and transcription. In Architecture of Eukaryotic Genes, G. Kahl, editor. VCH Publishers (Federal Republic of Germany,), pp. 243-249. |
| Kornberg, R.D., and Stryer, L. (1988) Statistical distributions of nucleosomes: Nonrandom locations by a stochastic mechanism. Nucl. Acids Res. 16:6677-6690. |
| Kimmerly, W., Buchman, A., Kornberg, R., and Rine, J. (1988) Roles of two DNA-binding factors in replication, segregating, and transcriptional repression mediated by a yeast silencer. EMBO J. 7:2241-2253. |
| Ribi, H.O., Ludwig, D.S., Mercer, K.L., Schoolnik, G.K., and Kornberg, R.D. (1988) Three-dimensional structure of cholera toxin penetrating a lipid membrane. Science 239:1272-1276. |
| Buchman, A.R., Kimmerly, W.J., Rine, J., and Kornberg, R.D. (1988) Two DNA binding factors recognize specific sequences at silencers, upstream activating sequences, autonomously replicating sequences, and telomeres in Saccharomyces cerevisiae. Mol. Cell. Biol. 8:210-225. |
| Lue, N.F., and Kornberg, R.D. (1987) Accurate initiation at RNA polymerase II promoters in extracts from Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 84: 8839-8843. |
| Kornberg, R.D., and Ribi, H.O. (1987) Formation of two-dimensional crystals of proteins on lipid layers. In Protein Structure, Folding, and Design 2, D.L. Oxender, editor. Alan R. Liss, Inc. (New York, New York), pp. 175-186. |
| Lue, N.F., Chasman, D.I., Buchman, A.R., and Kornberg, R.D. (1987) Interaction of GAL4 and GAL80 regulatory proteins in vitro. Mol. Cell. Biol. 7:3446-3451. |
| Ribi, H.O., Reichard, P., and Kornberg, R.D. (1987) Two-dimensional crystals of enzyme-effector complexes: ribonucleotide reductase at 18Å resolution. Biochemistry 26:7974-7979. |
| Sachs, A.B., Davis, R.W., and Kornberg, R.D. (1987) A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA-binding and cell viability. Mol. Cell. Biol. 7:3268-3276. |
| Lorch, Y., LaPointe, J.W., and Kornberg, R.D. (1987) Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones. Cell 49: 203-210. |
| Bram, R.J., and Kornberg, R.D. (1987) Isolation of a Saccharomyces cerevisiae centromere DNA-binding protein, its human homolog, and its possible role as a transcription factor. Mol. Cell. Biol. 7:403-409. |
| Ludwig, D.S., Ribi, H.O., Schoolnik, G.K., and Kornberg, R.D. (1986) Two-dimensional crystals of cholera toxin B subunit-receptor complexes: Projected structure at 17Å resolution. Proc. Natl. Acad. Sci. USA 83: 8585-8588. |
| Goldfarb, D.S., Gariepi, J., Schoolnik, G., and Kornberg, R.D. (1986) Synthetic peptides as nuclear localization signals, and anti-peptide antibodies for signal recognition. Nature 322:641-644. |
| Rothman, J.E., and Kornberg, R.D. (1986) An unfolding story of protein translocation. Nature 322:209-210. |
| Sachs, A.B., Bond, M.W., and Kornberg, R.D. (1986) A single gene from yeast for both nuclear and cytoplasmic polyadenylate-binding proteins: Domain structure and expression. Cell 45:827-835. |
| Kornberg, R.D. (1986) Overview: Mammalian cell membrane antigens. In Handbook of Experimental Immunology, 4th Edition, Weir and Herzenberg, editors. Blackwell Scientific Publications (Oxford), pp. 19.1-19.2. |
| Reidler, J., Uzgiris, E.E., and Kornberg, R.D. (1986) Two-dimensional crystals of immunoglobulins. In Handbook of Experimental Immunology, 4th Edition, Weir and Herzenberg, editors. Blackwell Scientific Publications (Oxford), pp. 17.1-17.5. |
| Bram, R.J., Lue, N.F., and Kornberg, R.D. (1986) A GAL family of upstream activating sequences in yeast: Roles in both induction and repression of transcription. EMBO J. 5:603-608. |
| Lorch, Y., and Kornberg, R.D. (1985) A region flanking the GAL7 gene and a binding site for GAL4 protein as upstream activating sequences in yeast. J. Mol. Biol. 186: 821-824. |
| Sachs, A.B., and Kornberg, R.D. (1985) Nuclear poly(A)-binding proteins: Purification and evolutionary conservation. In Nuclear Envelope Structure and RNA Maturation, E.A. Smuckler and G.A., Clawson, editors. Alan R. Liss, Inc. (New York, New York), pp. 119-123. |
| Sachs, A.B., and Kornberg, R.D. (1985) Nuclear polyadenylate-binding protein. Mol. Cell. Biol. 5:1993-1996. |
| Sperling, R., Sperling, J., Levine, A.D., Spann, P., Stark, G.R., and Kornberg, R.D. (1985) Abundant nuclear ribonucleoprotein form of CAD RNA. Mol. Cell. Biol. 5:569-575. |
| Bram, R.J., and Kornberg, R.D. (1985) Specific protein binding to far upstream activating sequences in polymerase II promoters. Proc. Natl. Acad. Sci. USA 82:43-47. |
| Nojima, H., and Kornberg, R.D. (1983) Genes and pseudogenes for mouse U1 and U2 small nuclear RNAs. J. Biol. Chem. 258:8151-8155. |
| Uzgiris, E.E., and Kornberg, R.D. (1983) Two-dimensional crystallization technique for imaging macromolecules, with an application to antigen-antibody-complement complexes. Nature 301:125-129. |
| Baer, B.W., and Kornberg, R.D. (1983) The protein responsible for the repeating structure of cytoplasmic poly(A)-RNP. J. Cell Biol. 96:717-721. |
| Prunell, A., and Kornberg, R.D. (1982) Variable center-to-center distance of nucleosomes in chromatin. J. Mol. Biol. 154:515-523. |
| Kornberg, R.D. (1981) The location of nucleosomes in chromatin: Specific or statistical? Nature 292:579-580. |
| Kornberg, R.D., and Klug, A. (1981) The nucleosome. Scientific American 244:52-64. |
| Baer, B.W., and Kornberg, R.D. (1980) Repeating structure of cytoplasmic poly(A)-ribonucleoprotein. Proc. Natl. Acad. Sci. 77:1890-1892. |
| Prunell, A., Kornberg, R.D., Lutter, L., Klug, A., Levitt, M., and Crick, F.H.C. (1979) Periodicity or deoxyribonuclease I digestion of chromatin. Science 204:855-858. |
| Baer, B.W., and Kornberg, R.D. (1979) Random locations of nucleosomes on genes for 5S rRNA. J. Biol. Chem. 254:9678-9681. |
| Prunell, A., and Kornberg, R.D. (1978) Relation of nucleosomes to DNA sequences. Cold Spring Harbor Symp. Quant. Biol. 42:103-108. |
| Prunell, A., and Kornberg, R.D. (1978) Relation of nucleosomes to nucleotide sequences in the rat. Phil. Trans. R. Soc. Lond. B. 283:269-173. |
| Thomas, J.O., and Kornberg, R.D. (1978) The study of histone-histone associations by chemical cross-linking. Meth. Cell Biol. 18:429-440. |
| Kornberg, R.D. (1977) Structure of chromatin. Ann. Rev. Biochem. 46:931-954. |
| Noll, M., and Kornberg, R.D. (1977) Action of micrococcal nuclease on chromatin and the location of H1. J. Mol. Biol. 109:393-404. |
| Kornberg, R.D. (1977) Structure of chromatin. In The Molecular Biology of the Mammalian Genetic Apparatus, P.O.P. T'so, editor, Elsevier (North Holland, Amsterdam), pp. 195-198. |
| Harrison, S.C., and Kornberg, R.D. (1976) X-Ray diffraction from isolated repeat units of chromatin. In Molecular Mechanisms in the Control of Gene Expression. Academic Press Inc., pp. 7-11. |
| Kornberg, R.D. (1975) Structure of chromatin. FEBS Symposia 38:73. |
| Thomas, J.O., and Kornberg, R.D. (1975) Cleavable cross-links in the analysis of histone-histone associations. FEBS Letters 58:353-358. |
| Finch, J.T., Noll, M., and Kornberg, R.D. (1975) Electron microscopy of defined lengths of chromatin. Proc. Natl. Acad. Sci. USA 72:3320-3322. |
| Thomas, J.O., and Kornberg, R.D. (1975) An octamer of histones in chromatin and free in solution. Proc. Natl. Acad. Sci. USA 72:2626-2630. |
| Noll, M., Thomas, J.O., and Kornberg, R.D. (1975) Preparation of native chromatin and damage caused by shearing. Science 187:1203-1206. |
| Kornberg, R.D. (1975) A model of chromatin structure. In The Eukaryote Chromosome, W. J. Peacock and R.D. Brock, editors. ANU Press (Canberra), pp. 245-253. |
| Kornberg, R.D. (1974) Chromatin structure: A repeating unit of histones and DNA. Science 184:868-871. |
| Kornberg, R.D., and Thomas, J.O. (1974) Chromatin structure: Oligomers of the histones. Science 184:865-868. |
| Kornberg, R.D. (1973) The diffusion of phospholipids in membranes. In Dynamic Aspects of Conformation Changes in Biological Macromolecules, C. Sadron, editor, pp. 477-486. |
| Kornberg, R.D., McNamee, M.G., and McConnell, H.M. (1972) Measurement of transmembrane potentials in phospholipid vesicles. Proc. Natl. Acad. Sci. USA 69: 1508-1513. |
| Kornberg, R.D., and McConnell, H.M. (1971) Lateral diffusion of phospholipids in a vesicle membrane. Proc. Natl. Acad. Sci. USA 68:2564-2568. |
| Kornberg, R.D., and McConnell, H.M. (1971) Inside-outside transitions of phospholipids in vesicle membranes. Biochemistry 10:1111-1120. |
| Jackson, J.F., Kornberg, R.D., Berg. P., RajBhandary, U.L, Stuart, A., Khorana, H.G., and Kornberg, A. (1965) On the heterogeneity of the deoxyribonucleic acid associated with crystalline yeast cytochrome b2. Biochim. Biophys. Acta 108:243-248. |
| Berg, P., Kornberg, R.D., Fancher, H., and Dieckmann, M. (1965) Competition between RNA polymerase and DNA polymerase for the DNA template. Biochem. Biophys. Res. Comm. 18:243-248. |
